PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_7848375g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 471aa    MW: 53046 Da    PI: 4.9523
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_7848375g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH292e-09383425754
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       +ErrRR+r+N+++  Lr+++P+ +      K++  ++L  ++eY k+L
  MA_7848375g0010 383 LAERRRRKRLNERLCMLRSVVPTiS------KMDRTSVLSDTIEYTKQL 425
                      58*********************66......**************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0001802133IPR018247EF-Hand 1, calcium-binding site
PROSITE profilePS5088814.602376425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-14378439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-9382431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-13383437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-7383425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MDTSIYAPTC LNRAIAESPW DNNTNGHIDI PEYRVLQEVN GIALKYSNLE TANSVLNVIG  60
VTRNPNTELV LEDIKSQYGA DTFEGCTHSQ RDPCAWNPIS PWDFDENSIR HGYCQSSKCF  120
KTESREDGGD FGLSSGVELE QNAFGDGTVF KSENSNALHK DQSLDLEKNS WERFSGQALQ  180
SELGLICTNV SDISHVGSES SNFSLRYMHE NFRKTTIGQP YHGMSFNQYD EMEMNRRLFS  240
YTTENVTSTL LDEQRTSIEL FGIEGTKGIA AVFVNEPDGS DGEMLLSTSY KTEIYSDEQS  300
PDTVDLPVKH SEKMVPINTA ERKVANKDGN REENDSITKG LMVKNGDNGA MVTFTTGEIE  360
SSYAKAVGGG MRKGKGQPAK NLLAERRRRK RLNERLCMLR SVVPTISKMD RTSVLSDTIE  420
YTKQLLHQIR FLQRELEPQT DWPALQEPIK DTFGQWPWLG TKNLQTNKFS R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1384391ERRRRKRL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1123340.0BT112334.1 Picea glauca clone GQ03313_I24 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5571678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.24e-10beta HLH protein 93